Influenza Database
FUNDED BY THE CONNELL FOUNDATION

Example 1

Find all nodes from tree "PDB40_Family_d1gzta_" within 2.9 units of phylogenetic distance from node "N14-aag38551_hemagglutini...:S=Influenza_A_virus_.A_chicken_Taiwan_na3_98.H6N1..:0.06914"

Step 1

  1. Select tree from list
  2. Check Distance relative to node checkbox
  3. Enter desired maximum phylogenetic distance (2.9)
  4. Press Submit button

Step 2

  1. Select reference node from list
  2. Press Search button
  3. if you want to change some parameters press Back button

Step 3

  1. In the result table nodes having extra information are shown in green. Click on this nodes to get more information.

Example 2

Find all node pairs from trees "PDB40_Family_d1gzta_" and "PDB40_Family_d1flca1" which have 2.9 units of phylogenetic distance between them.

Step 1

  1. Select tree from list
  2. Check Pair by pair distance checkbox
  3. Enter desired maximum phylogenetic distance (2.9)
  4. Press Submit button

Step 2

  1. Review parameters
  2. Press Search button
  3. if you want to change some parameters press Back button

Step 3

  1. In the result table nodes having extra information are shown in green. Click on this nodes to get more information.

Example 3: Genome details page

Example of the genome detail page, with map showing location where genome was isolated.

Example 4: Phylogenetic tree

Example of the 3D visualisation of phylogenetic tree. (Google Earth is required to open generated KML files)
Each leaf of the tree represents some sequence, and is located in the place where corresponding virus genome was found.
This representation allows easily identify approximate location of the root node.

    Example KML files:
  1. 3D phylogenetic tree of human H5N1 influenza (HE)
  2. 3D phylogenetic tree of human H5N1 influenza (NA)

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