Meeting the informatics challenges of Avian Flu
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The threat of an Avian Flu pandemic that may soon transmit from man to man is real. Avian flu virus is a segmented negative strand RNA virus. Eight segments of RNA code for 11 proteins. In this integrated database we are providing access to heterogeneous information that are of value to researchers in epidemiology, virology and vaccine development. We have chosen evolutionary distance, as specified by phylogenetic trees, to rationalize the information integration scheme of this database. The assumption here is that virus properties, such as virulence, infectivity, host-specificity, the ability to jump host species, geographic locations, morbidity in an epidemic, or host-specific reactions are related by evolutionary lineages. RNA and protein sequence data, and phylogenetic trees constructed over these sequences, form the core of this database. |
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